mythos.observables.membrane_thickness
Membrane thickness observable.
Classes
Observable for calculating membrane thickness from a trajectory. |
Module Contents
- class mythos.observables.membrane_thickness.MembraneThickness[source]
Observable for calculating membrane thickness from a trajectory.
This observable uses the LiPyphilic package to assign leaflets and compute membrane thickness, so see its documentation for more details on the lipid_sel and thickness_sel arguments: https://lipyphilic.readthedocs.io/en/latest/.
- Parameters:
topology – MDAnalysis Universe topology for the system, should not contain the trajectory data.
lipid_sel – selection string for lipid tail atoms using MDAnalysis query (e.g. “name GL1 GL2”).
thickness_sel – selection string for atoms to use in thickness calculation (e.g. “name PO4”).
- topology: MDAnalysis.Universe
- __call__(trajectory: mythos.simulators.io.SimulatorTrajectory) float[source]