mythos.simulators.gromacs.utils
===============================

.. py:module:: mythos.simulators.gromacs.utils

.. autoapi-nested-parse::

   Utilities for the GROMACS simulator.



Attributes
----------

.. autoapisummary::

   mythos.simulators.gromacs.utils.ANGSTROMS_TO_NM
   mythos.simulators.gromacs.utils.logger


Functions
---------

.. autoapisummary::

   mythos.simulators.gromacs.utils.read_trajectory_mdanalysis


Module Contents
---------------

.. py:data:: ANGSTROMS_TO_NM
   :value: 0.1


.. py:data:: logger

.. py:function:: read_trajectory_mdanalysis(topology_file: pathlib.Path, trajectory_file: pathlib.Path) -> mythos.simulators.io.SimulatorTrajectory

   Read a GROMACS trajectory using MDAnalysis.

   :param topology_file: Path to the topology file (e.g., output.tpr).
   :param trajectory_file: Path to the trajectory file (e.g., output.trr).

   :returns: SimulatorTrajectory containing the rigid body trajectory data.